Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TTC39B ENSPTRG00000020784

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Description

tetratricopeptide repeat domain 39B [Source:VGNC Symbol;Acc:VGNC:4892]

Location

Chromosome 9: 15,490,057-15,627,894 reverse strand.

Pan_tro_3.0:CM000323.3

About this gene

This gene has 4 transcripts (splice variants), 259 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000038461.5	TTC39B-202	3259	682aa	ENSPTRP00000035547.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WES8 H2QX08	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000092899.1	TTC39B-201	6919	517aa	ENSPTRP00000064743.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8M4K9 A0A6D2XRX9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000090551.1	TTC39B-203	1842	613aa	ENSPTRP00000064018.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RI08 A0A6D2XV77	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000106961.1	TTC39B-204	1731	576aa	ENSPTRP00000081050.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SVQ2	-

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Summary

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