Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CBFA2T2 ENSPTRG00000013401

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Description

CBFA2/RUNX1 partner transcriptional co-repressor 2 [Source:VGNC Symbol;Acc:VGNC:9831]

Location

Chromosome 20: 34,880,003-35,032,248 forward strand.

Pan_tro_3.0:CM000334.4

About this gene

This gene has 7 transcripts (splice variants), 213 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000083682.1	CBFA2T2-204	1845	614aa	ENSPTRP00000091583.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TQP7 A0A6D2X6Q3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSPTRT00000109389.1	CBFA2T2-202	3863	575aa	ENSPTRP00000064360.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2J8JYD9 A0A6D2YBT6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000111223.1	CBFA2T2-203	3184	604aa	ENSPTRP00000086052.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2XLD3 K7BHN3	-
ENSPTRT00000088786.1	CBFA2T2-201	1788	595aa	ENSPTRP00000084404.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T5A1 A0A6D2WG06	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000097829.1	CBFA2T2-206	1788	595aa	ENSPTRP00000093217.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S873	-
ENSPTRT00000024891.6	CBFA2T2-205	1770	589aa	ENSPTRP00000022975.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QK70	-
ENSPTRT00000101786.1	CBFA2T2-207	792	263aa	ENSPTRP00000068660.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RVB2 A0A6D2X1M3	-

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Summary

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