Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: USF2 ENSPTRG00000010836

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Description

upstream transcription factor 2, c-fos interacting [Source:VGNC Symbol;Acc:VGNC:14761]

Location

Chromosome 19: 37,212,407-37,225,784 forward strand.

Pan_tro_3.0:CM000333.3

About this gene

This gene has 5 transcripts (splice variants), 243 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000079058.1	USF2-202	1011	336aa	ENSPTRP00000078107.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SM74	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000094450.1	USF2-205	1011	336aa	ENSPTRP00000086012.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T9V6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000111443.1	USF2-201	996	331aa	ENSPTRP00000087693.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TEM7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000020063.7	USF2-203	801	266aa	ENSPTRP00000018552.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QG22	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000097938.1	USF2-204	609	202aa	ENSPTRP00000071668.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S3Z5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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