Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NFIX ENSPTRG00000010555

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Description

nuclear factor I X [Source:VGNC Symbol;Acc:VGNC:11206]

Location

Chromosome 19: 13,760,970-13,835,849 forward strand.

Pan_tro_3.0:CM000333.3

About this gene

This gene has 5 transcripts (splice variants), 207 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000019462.6	NFIX-204	1488	495aa	ENSPTRP00000018015.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2QFI2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000086590.1	NFIX-203	6091	455aa	ENSPTRP00000089541.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TJZ2 A0A6D2Y4Z1	-
ENSPTRT00000081917.1	NFIX-201	5741	494aa	ENSPTRP00000070219.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RZQ5 A0A6D2XHJ1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000097400.1	NFIX-202	5591	433aa	ENSPTRP00000078066.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SNH2 A0A6D2W7X5	-
ENSPTRT00000099838.1	NFIX-205	1383	460aa	ENSPTRP00000064451.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RIH3	-

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Summary

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