Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Orthologues
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Ontologies
- GO: Anatomical entity
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Genetic Variation
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- Structural variants
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Gene: GTF3C1 ENSPTRG00000007915

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Description

ral transcription factor IIIC subunit 1 [Source:VGNC Symbol;Acc:VGNC:9008]

Location

Chromosome 16: 26,998,834-27,087,668 reverse strand.

Pan_tro_3.0:CM000330.3

About this gene

This gene has 2 transcripts (splice variants) and 217 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000047908.4	GTF3C1-201	7102	2109aa	ENSPTRP00000040679.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2WR91 K7BH73	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000060314.3	GTF3C1-202	1275	424aa	ENSPTRP00000053663.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2RAA3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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