Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SOX6 ENSPTRG00000003393

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Description

SRY-box transcription factor 6 [Source:VGNC Symbol;Acc:VGNC:1000]

Location

Chromosome 11: 15,824,470-16,265,226 reverse strand.

Pan_tro_3.0:CM000325.3

About this gene

This gene has 3 transcripts (splice variants), 273 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000048195.5	SOX6-201	7487	828aa	ENSPTRP00000043537.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2R284	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000100342.1	SOX6-202	7406	801aa	ENSPTRP00000068951.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RW56	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000081756.1	SOX6-203	2415	804aa	ENSPTRP00000068872.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RW72	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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