Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LYST ENSPTRG00000002134

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Description

lysosomal trafficking regulator [Source:VGNC Symbol;Acc:VGNC:1308]

Location

Chromosome 1: 214,755,834-214,959,769 reverse strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 4 transcripts (splice variants), 200 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000088063.1	LYST-202	11442	3813aa	ENSPTRP00000071504.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S3C6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000049627.6	LYST-201	13492	3802aa	ENSPTRP00000041340.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H2R0V7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSPTRT00000096229.1	LYST-203	4152	1383aa	ENSPTRP00000064862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RJM9 A0A6D2Y704	-
ENSPTRT00000085732.1	LYST-204	4092	1363aa	ENSPTRP00000062127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RBT1	-

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Summary

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