Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TPM3 ENSPTRG00000001375

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Description

tropomyosin 3 [Source:VGNC Symbol;Acc:VGNC:1697]

Location

Chromosome 1: 132,227,969-132,263,704 reverse strand.

Pan_tro_3.0:CM000314.3

About this gene

This gene has 8 transcripts (splice variants), 254 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSPTRT00000101240.1	TPM3-204	2328	285aa	ENSPTRP00000084259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3T4U6 A0A6D2XQG1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSPTRT00000105726.1	TPM3-201	3482	247aa	ENSPTRP00000071116.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S2P6 A0A6D2X1Y7	-
ENSPTRT00000094257.1	TPM3-202	3482	247aa	ENSPTRP00000092863.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3TUK0 A0A6D2WKY6	-
ENSPTRT00000107451.1	TPM3-203	2233	248aa	ENSPTRP00000088379.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3THN2 A0A6D2WCT2	-
ENSPTRT00000002521.6	TPM3-206	1515	285aa	ENSPTRP00000002318.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6D2Y8M3 H2Q049	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSPTRT00000090447.1	TPM3-207	825	274aa	ENSPTRP00000066590.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3RPL2	-
ENSPTRT00000105623.1	TPM3-208	780	259aa	ENSPTRP00000081030.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3SVN5	-
ENSPTRT00000108132.1	TPM3-205	684	227aa	ENSPTRP00000070178.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2I3S0S5 A0A6D2XHX9	-

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Summary

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