Assembly
The Oar_v3.1 assembly was submitted by International Sheep Genome Consortium and last updated on 2014-01-02. The assembly is on the chromosome level, consisting of 130764 contigs assembled into 5697 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 40376 while the scaffold N50 is 100079507.
Other assemblies
- ASM2241677v1 (Ensembl release 113)
Gene annotation
Genome annotation was generated using the Ensembl vertebrate annotation pipeline.
In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.
More information
General information about this species can be found in Wikipedia.
Statistics
Summary
Assembly | Oar_v3.1, INSDC Assembly GCA_000298735.1, Aug 2012 |
Base Pairs | 2,619,054,388 |
Golden Path Length | 2,619,054,388 |
Annotation provider | Ensembl |
Annotation method | Mixed strategy build |
Genebuild started | Dec 2012 |
Genebuild released | Dec 2013 |
Genebuild last updated/patched | May 2015 |
Database version | 115.31 |
Gene counts
Coding genes | 20,921 |
Non coding genes | 5,843 |
Small non coding genes | 3,624 |
Long non coding genes | 1,858 |
Misc non coding genes | 361 |
Pseudogenes | 290 |
Gene transcripts | 29,118 |
Other
Genscan gene predictions | 43,449 |
Short Variants | 60,323,418 |
Structural variants | 2 |