Assembly
The ARS-UI_Ramb_v3.0 assembly was submitted by University of Idaho and last updated on 2024-07-26. The assembly is on the chromosome level, consisting of 227 contigs assembled into 143 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 43178051 while the scaffold N50 is 101274418.
Other assemblies
- Oar_v3.1 (Ensembl release 114)
Gene annotation
Genome annotation was generated using the Ensembl vertebrate annotation pipeline.
In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.
More information
General information about this species can be found in Wikipedia.
Statistics
Summary
Assembly | ARS-UI_Ramb_v3.0, INSDC Assembly GCA_016772045.2, Jul 2023 |
Base Pairs | 2,654,063,983 |
Golden Path Length | 2,654,063,983 |
Annotation provider | Ensembl |
Annotation method | Full genebuild |
Genebuild started | Jan 2024 |
Genebuild released | |
Genebuild last updated/patched | Dec 2024 |
Database version | 115.3 |
Gene counts
Coding genes | 19,878 |
Non coding genes | 36,948 |
Small non coding genes | 2,914 |
Long non coding genes | 34,015 |
Misc non coding genes | 19 |
Pseudogenes | 234 |
Gene transcripts | 95,666 |
Other
Short Variants | 0 |
Structural variants | 2 |