Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: limch1a ENSONIG00000010070

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Description

LIM and calponin homology domains 1a [Source:ZFIN;Acc:ZDB-GENE-090312-153]

Location

Primary_assembly LG6: 15,123,161-15,155,304 forward strand.

O_niloticus_UMD_NMBU:CM007487.2

About this gene

This gene has 9 transcripts (splice variants), 212 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSONIT00000012674.2	limch1a-201	6482	1802aa	ENSONIP00000012664.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3JUW9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSONIT00000036473.1	limch1a-202	6368	1764aa	ENSONIP00000037251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A669BS58	-
ENSONIT00000085645.1	limch1a-203	6329	1751aa	ENSONIP00000034359.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A669BIG6	-
ENSONIT00000079758.1	limch1a-204	6224	1716aa	ENSONIP00000065737.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A669E487	-
ENSONIT00000079382.1	limch1a-205	6119	1681aa	ENSONIP00000060616.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A669DQ79	-
ENSONIT00000067138.1	limch1a-206	5954	1626aa	ENSONIP00000074610.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A669ETB1	-
ENSONIT00000035237.1	limch1a-207	5813	1579aa	ENSONIP00000046127.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A669CHY0	-
ENSONIT00000052602.1	limch1a-208	4415	1113aa	ENSONIP00000058553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A669DG77	-
ENSONIT00000085659.1	limch1a-209	4376	1100aa	ENSONIP00000051062.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A669CUH5	-

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Summary

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