Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Orthologues
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Ontologies
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Genetic Variation
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- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Lsm5 MGP_SPRETEiJ_G0029423

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Description

LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:MGI Symbol;Acc:MGI:1913623]

Location

Chromosome 6: 54,724,777-54,728,442 reverse strand.

SPRET_EiJ_v1:CM004099.1

About this gene

This gene has 4 transcripts (splice variants) and 211 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_SPRETEiJ_T0076878.1	Lsm5-201	471	91aa	MGP_SPRETEiJ_P0076878	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_SPRETEiJ_T0076879.1	Lsm5-202	410	59aa	MGP_SPRETEiJ_P0076879	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_SPRETEiJ_T0076881.1	Lsm5-204	366	42aa	MGP_SPRETEiJ_P0076881	Nonsense mediated decay	-
MGP_SPRETEiJ_T0076880.1	Lsm5-203	751	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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