Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Hdlbp MGP_SPRETEiJ_G0015260

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Description

high density lipoprotein (HDL) binding protein [Source:MGI Symbol;Acc:MGI:99256]

Location

Chromosome 1: 93,297,640-93,370,196 reverse strand.

SPRET_EiJ_v1:CM004094.1

About this gene

This gene has 11 transcripts (splice variants), 205 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_SPRETEiJ_T0020236.1	Hdlbp-201	6234	1268aa	MGP_SPRETEiJ_P0020236	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_SPRETEiJ_T0020237.1	Hdlbp-202	4427	1268aa	MGP_SPRETEiJ_P0020237	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_SPRETEiJ_T0020238.1	Hdlbp-203	3808	1199aa	MGP_SPRETEiJ_P0020238	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_SPRETEiJ_T0020243.1	Hdlbp-208	850	129aa	MGP_SPRETEiJ_P0020243	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_SPRETEiJ_T0020241.1	Hdlbp-206	740	178aa	MGP_SPRETEiJ_P0020241	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_SPRETEiJ_T0020242.1	Hdlbp-207	671	141aa	MGP_SPRETEiJ_P0020242	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_SPRETEiJ_T0020240.1	Hdlbp-205	528	22aa	MGP_SPRETEiJ_P0020240	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_SPRETEiJ_T0020245.1	Hdlbp-210	341	22aa	MGP_SPRETEiJ_P0020245	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_SPRETEiJ_T0020246.1	Hdlbp-211	3218	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_SPRETEiJ_T0020239.1	Hdlbp-204	2173	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_SPRETEiJ_T0020244.1	Hdlbp-209	630	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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