Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Rrp1b MGP_PahariEiJ_G0023695

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Description

ribosomal RNA processing 1B [Source:NCBI gene;Acc:110338218]

Location

Chromosome 21: 27,030,801-27,057,982 forward strand.

PAHARI_EIJ_v1.1:LT608306.1

About this gene

This gene has 11 transcripts (splice variants), 200 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0056167.1	Rrp1b-201	4604	733aa	MGP_PahariEiJ_P0056167	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0056169.1	Rrp1b-203	719	118aa	MGP_PahariEiJ_P0056169	Nonsense mediated decay	-
MGP_PahariEiJ_T0056173.1	Rrp1b-207	629	184aa	MGP_PahariEiJ_P0056173	Nonsense mediated decay	-
MGP_PahariEiJ_T0056175.1	Rrp1b-209	654	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0056170.1	Rrp1b-204	4233	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0056171.1	Rrp1b-205	1004	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0056174.1	Rrp1b-208	879	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0056176.1	Rrp1b-210	663	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0056172.1	Rrp1b-206	590	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0056168.1	Rrp1b-202	534	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0056177.1	Rrp1b-211	478	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Summary

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