Summary
- Splice variants
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- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Gene: MGP_PahariEiJ_G0026665

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Description

HCLS1 associated protein X-1 [Source:NCBI gene;Acc:110320291]

Location

Chromosome 4: 80,450,424-80,453,916 reverse strand.

PAHARI_EIJ_v1.1:LT608287.1

About this gene

This gene has 6 transcripts (splice variants) and 205 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0069702.1	-	705	205aa	MGP_PahariEiJ_P0069702	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0069705.1	-	368	68aa	MGP_PahariEiJ_P0069705	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0069703.1	-	873	35aa	MGP_PahariEiJ_P0069703	Nonsense mediated decay	-
MGP_PahariEiJ_T0069704.1	-	836	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0069701.1	-	1015	279aa	MGP_PahariEiJ_P0069701	Unknown likely coding	-
MGP_PahariEiJ_T0069700.1	-	937	253aa	MGP_PahariEiJ_P0069700	Unknown likely coding	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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