Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
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Supporting evidence
ID History
- Gene history

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Gene: Scn2a MGP_PahariEiJ_G0025053

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Description

sodium channel, voltage-gated, type II, alpha [Source:MGI Symbol;Acc:MGI:98248]

Location

Chromosome 3: 51,843,029-51,973,315 forward strand.

PAHARI_EIJ_v1.1:LT608290.1

About this gene

This gene has 9 transcripts (splice variants), 129 orthologues and 26 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0063021.1	Scn2a-201	8950	2006aa	MGP_PahariEiJ_P0063021	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0063026.1	Scn2a-206	8706	2006aa	MGP_PahariEiJ_P0063026	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0063025.1	Scn2a-205	6352	2006aa	MGP_PahariEiJ_P0063025	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0063022.1	Scn2a-202	1809	504aa	MGP_PahariEiJ_P0063022	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0063028.1	Scn2a-208	577	106aa	MGP_PahariEiJ_P0063028	Nonsense mediated decay	-
MGP_PahariEiJ_T0063029.1	Scn2a-209	514	98aa	MGP_PahariEiJ_P0063029	Nonsense mediated decay	-
MGP_PahariEiJ_T0063023.1	Scn2a-203	2445	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0063024.1	Scn2a-204	1496	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0063027.1	Scn2a-207	698	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data