Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
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ID History
- Gene history

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Gene: Col1a1 MGP_PahariEiJ_G0018123

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Description

collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]

Location

Chromosome 14: 62,370,493-62,387,137 forward strand.

PAHARI_EIJ_v1.1:LT608308.1

About this gene

This gene has 4 transcripts (splice variants), 186 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0036026.1	Col1a1-201	5859	1453aa	MGP_PahariEiJ_P0036026	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0036027.1	Col1a1-202	337	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0036028.1	Col1a1-203	496	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
MGP_PahariEiJ_T0036029.1	Col1a1-204	364	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data