Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Export data

Share this page

Bookmark this page

.

Gene: Vps29 MGP_PahariEiJ_G0024283

.

Description

VPS29 retromer complex component [Source:NCBI gene;Acc:110312804]

Location

Chromosome 23: 12,325,162-12,333,967 forward strand.

PAHARI_EIJ_v1.1:LT608309.1

About this gene

This gene has 8 transcripts (splice variants) and 212 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
MGP_PahariEiJ_T0058768.1	Vps29-201	999	186aa	MGP_PahariEiJ_P0058768	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_PahariEiJ_T0058769.1	Vps29-202	719	144aa	MGP_PahariEiJ_P0058769	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0058774.1	Vps29-207	549	182aa	MGP_PahariEiJ_P0058774	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0058772.1	Vps29-205	413	126aa	MGP_PahariEiJ_P0058772	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
MGP_PahariEiJ_T0058771.1	Vps29-204	871	53aa	MGP_PahariEiJ_P0058771	Nonsense mediated decay	-
MGP_PahariEiJ_T0058773.1	Vps29-206	488	37aa	MGP_PahariEiJ_P0058773	Nonsense mediated decay	-
MGP_PahariEiJ_T0058770.1	Vps29-203	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
MGP_PahariEiJ_T0058775.1	Vps29-208	3273	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

.

Strains

.

Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

.

Personal Data