Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: MGP_CASTEiJ_G0028684

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Location

Chromosome 5: 64,042,040-64,046,074 reverse strand.

CAST_EiJ_v1:CM003998.1

Reference strain equivalent

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
MGP_CASTEiJ_T0072010.1	-	738	192aa	MGP_CASTEiJ_P0072010	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CASTEiJ_T0072011.1	-	2598	107aa	MGP_CASTEiJ_P0072011	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-
MGP_CASTEiJ_T0072008.1	-	1189	166aa	MGP_CASTEiJ_P0072008	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-
MGP_CASTEiJ_T0072017.1	-	735	192aa	MGP_CASTEiJ_P0072017	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-
MGP_CASTEiJ_T0072014.1	-	679	192aa	MGP_CASTEiJ_P0072014	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-
MGP_CASTEiJ_T0072009.1	-	387	65aa	MGP_CASTEiJ_P0072009	Nonsense mediated decay		-
MGP_CASTEiJ_T0072012.1	-	2557	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-
MGP_CASTEiJ_T0072018.1	-	1641	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-
MGP_CASTEiJ_T0072015.1	-	1584	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-
MGP_CASTEiJ_T0072013.1	-	456	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-
MGP_CASTEiJ_T0072007.1	-	428	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-
MGP_CASTEiJ_T0072016.1	-	702	160aa	MGP_CASTEiJ_P0072016	Unknown likely coding		-

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Summary

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