Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Aptx MGP_CASTEiJ_G0027299

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Description

aprataxin [Source:MGI Symbol;Acc:MGI:1913658]

Gene Synonyms

2410016G21Rik, AA388047, FHA-HIT

Location

Chromosome 4: 38,258,690-38,282,075 reverse strand.

CAST_EiJ_v1:CM003997.1

Reference strain equivalent

About this gene

This gene has 6 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_CASTEiJ_T0065052.1	-	4967	342aa	MGP_CASTEiJ_P0065052	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38711, CCDS38712	E0CXB7 Q7TQC5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CASTEiJ_T0065053.1	-	4834	335aa	MGP_CASTEiJ_P0065053	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0065054.1	-	1950	240aa	MGP_CASTEiJ_P0065054	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0065055.1	-	1378	48aa	MGP_CASTEiJ_P0065055	Nonsense mediated decay		-	-
MGP_CASTEiJ_T0065057.1	-	639	48aa	MGP_CASTEiJ_P0065057	Nonsense mediated decay		-	-
MGP_CASTEiJ_T0065056.1	-	355	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-

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Summary

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