Description
RNA binding motif protein 39 [Source:MGI Symbol;Acc:MGI:2157953]
Gene Synonyms
1500012C14Rik, 2310040E03Rik, B330012G18Rik, C79248, Caper, Caper alpha, R75070, Rnpc2, caper
Location
Chromosome 2: 159,792,977-159,829,842 reverse strand.
CAST_EiJ_v1:CM003995.1
Reference strain equivalent
About this gene
This gene has 25 transcripts (splice variants).
Transcripts
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| MGP_CASTEiJ_T0058647.1 | - | 2811 | 530aa | MGP_CASTEiJ_P0058647 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS16964, CCDS71168 | B7ZD61 B7ZD63 B7ZD64 D6RCZ8 D6RJ85 E9PZF9 E9Q8F0 E9Q999 F7AA45 Q3U313 Q8VH51 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| MGP_CASTEiJ_T0058650.1 | - | 2712 | 524aa | MGP_CASTEiJ_P0058650 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | |
| MGP_CASTEiJ_T0058648.1 | - | 2581 | 524aa | MGP_CASTEiJ_P0058648 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | |
| MGP_CASTEiJ_T0058654.1 | - | 1090 | 273aa | MGP_CASTEiJ_P0058654 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | |
| MGP_CASTEiJ_T0058653.1 | - | 931 | 310aa | MGP_CASTEiJ_P0058653 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | |
| MGP_CASTEiJ_T0058658.1 | - | 754 | 156aa | MGP_CASTEiJ_P0058658 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | |
| MGP_CASTEiJ_T0058667.1 | - | 667 | 38aa | MGP_CASTEiJ_P0058667 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | |
| MGP_CASTEiJ_T0058649.1 | - | 2745 | 415aa | MGP_CASTEiJ_P0058649 | Nonsense mediated decay | - | - | |
| MGP_CASTEiJ_T0058652.1 | - | 2127 | 47aa | MGP_CASTEiJ_P0058652 | Nonsense mediated decay | - | - | |
| MGP_CASTEiJ_T0058651.1 | - | 2120 | 40aa | MGP_CASTEiJ_P0058651 | Nonsense mediated decay | - | - | |
| MGP_CASTEiJ_T0058666.1 | - | 743 | 40aa | MGP_CASTEiJ_P0058666 | Nonsense mediated decay | - | - | |
| MGP_CASTEiJ_T0058662.1 | - | 707 | 40aa | MGP_CASTEiJ_P0058662 | Nonsense mediated decay | - | - | |
| MGP_CASTEiJ_T0058669.1 | - | 699 | 40aa | MGP_CASTEiJ_P0058669 | Nonsense mediated decay | - | - | |
| MGP_CASTEiJ_T0058663.1 | - | 593 | 39aa | MGP_CASTEiJ_P0058663 | Nonsense mediated decay | - | - | |
| MGP_CASTEiJ_T0058665.1 | - | 585 | 62aa | MGP_CASTEiJ_P0058665 | Nonsense mediated decay | - | - | |
| MGP_CASTEiJ_T0058661.1 | - | 685 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | |
| MGP_CASTEiJ_T0058656.1 | - | 546 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | |
| MGP_CASTEiJ_T0058659.1 | - | 497 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | |
| MGP_CASTEiJ_T0058657.1 | - | 1457 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | |
| MGP_CASTEiJ_T0058670.1 | - | 1008 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | |
| MGP_CASTEiJ_T0058671.1 | - | 715 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | |
| MGP_CASTEiJ_T0058660.1 | - | 714 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | |
| MGP_CASTEiJ_T0058664.1 | - | 710 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | |
| MGP_CASTEiJ_T0058655.1 | - | 695 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | |
| MGP_CASTEiJ_T0058668.1 | - | 672 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - |
