Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Synj2 MGP_CASTEiJ_G0022359

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Description

synaptojanin 2 [Source:MGI Symbol;Acc:MGI:1201671]

Gene Synonyms

AI481647, Kiaa0348, SJ2, mKIAA0348

Location

Chromosome 17: 3,130,349-3,239,841 forward strand.

CAST_EiJ_v1:CM004010.1

Reference strain equivalent

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_CASTEiJ_T0045236.1	-	5032	1479aa	MGP_CASTEiJ_P0045236	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28365, CCDS49931, CCDS49932, CCDS70757	D3YWM9 D3YZB2 D3YZB3 D3YZB4 D3YZB5 D3Z6E7 E9Q4P5 F6U4I6 F7BI35 F8WHD8 Q9D2G5 S4R207	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CASTEiJ_T0045243.1	-	5132	1273aa	MGP_CASTEiJ_P0045243	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0045242.1	-	4810	1394aa	MGP_CASTEiJ_P0045242	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0045239.1	-	4795	1434aa	MGP_CASTEiJ_P0045239	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0045241.1	-	4072	1216aa	MGP_CASTEiJ_P0045241	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0045245.1	-	4013	1194aa	MGP_CASTEiJ_P0045245	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0045248.1	-	3778	1118aa	MGP_CASTEiJ_P0045248	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0045237.1	-	3584	1144aa	MGP_CASTEiJ_P0045237	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0045244.1	-	3498	1016aa	MGP_CASTEiJ_P0045244	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0045250.1	-	2792	725aa	MGP_CASTEiJ_P0045250	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0045247.1	-	2634	824aa	MGP_CASTEiJ_P0045247	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0045246.1	-	2537	535aa	MGP_CASTEiJ_P0045246	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0045240.1	-	2513	660aa	MGP_CASTEiJ_P0045240	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0045251.1	-	1260	384aa	MGP_CASTEiJ_P0045251	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0045238.1	-	5535	84aa	MGP_CASTEiJ_P0045238	Nonsense mediated decay		-	-
MGP_CASTEiJ_T0045249.1	-	460	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-

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Summary

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