Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
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Genetic Variation
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- Structural variants
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ID History
- Gene history

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Gene: Aff4 MGP_CASTEiJ_G0017605

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Description

AF4/FMR2 family, member 4 [Source:MGI Symbol;Acc:MGI:2136171]

Gene Synonyms

AF5Q31, Alf4, Laf4l, MCEF

Location

Chromosome 11: 52,419,882-52,495,631 forward strand.

CAST_EiJ_v1:CM004004.1

Reference strain equivalent

About this gene

This gene has 7 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_CASTEiJ_T0028435.1	-	10099	1160aa	MGP_CASTEiJ_P0028435	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24676	B7ZC42 F6WNE9 Q9ESC8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CASTEiJ_T0028438.1	-	476	158aa	MGP_CASTEiJ_P0028438	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0028436.1	-	464	122aa	MGP_CASTEiJ_P0028436	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_CASTEiJ_T0028439.1	-	429	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_CASTEiJ_T0028437.1	-	3788	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0028441.1	-	944	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_CASTEiJ_T0028440.1	-	687	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Summary

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