Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Synj1 MGP_C57BL6NJ_G0023449

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Description

synaptojanin 1 [Source:MGI Symbol;Acc:MGI:1354961]

Gene Synonyms

A930006D20Rik, AA675315, mKIAA0910

Location

Chromosome 16: 94,898,255-94,975,880 reverse strand.

C57BL_6NJ_v1:CM004230.1

Reference strain equivalent

About this gene

This gene has 10 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C57BL6NJ_T0045500.1	-	7090	1607aa	MGP_C57BL6NJ_P0045500	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS49906, CCDS49907	D3Z1M7 D3Z656 E9Q7S0 F6VSS8 F6XIX0 F7BQW7 F7CD11	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C57BL6NJ_T0045501.1	-	7012	1309aa	MGP_C57BL6NJ_P0045501	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0045503.1	-	4771	1323aa	MGP_C57BL6NJ_P0045503	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0045502.1	-	3501	188aa	MGP_C57BL6NJ_P0045502	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0045508.1	-	2189	693aa	MGP_C57BL6NJ_P0045508	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0045505.1	-	547	103aa	MGP_C57BL6NJ_P0045505	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0045506.1	-	354	117aa	MGP_C57BL6NJ_P0045506	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C57BL6NJ_T0045504.1	-	772	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-
MGP_C57BL6NJ_T0045507.1	-	2743	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C57BL6NJ_T0045509.1	-	947	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Summary

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