Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
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Ontologies
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Genetic Variation
- Variant table
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- Structural variants
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ID History
- Gene history

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Gene: Smn1 MGP_C3HHeJ_G0020624

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Description

survival motor neuron 1 [Source:MGI Symbol;Acc:MGI:109257]

Gene Synonyms

AI849087, Gemin1, SMN, Smn

Location

Chromosome 13: 100,744,921-100,759,005 forward strand.

C3H_HeJ_v1:CM004247.1

Reference strain equivalent

About this gene

This gene has 9 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_C3HHeJ_T0037684.1	-	1222	288aa	MGP_C3HHeJ_P0037684	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26725	B8JJX7 D6RI18 P97801 Q549F9 Q5PXT4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_C3HHeJ_T0037688.1	-	485	161aa	MGP_C3HHeJ_P0037688	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C3HHeJ_T0037687.1	-	223	39aa	MGP_C3HHeJ_P0037687	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_C3HHeJ_T0037686.1	-	421	46aa	MGP_C3HHeJ_P0037686	Nonsense mediated decay		-	-
MGP_C3HHeJ_T0037691.1	-	639	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C3HHeJ_T0037689.1	-	600	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C3HHeJ_T0037690.1	-	547	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C3HHeJ_T0037685.1	-	453	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_C3HHeJ_T0037692.1	-	417	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

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Summary

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