Transcript: MGP_LPJ_T0095275.1

Description

histone deacetylase 6 [Source:MGI Symbol;Acc:MGI:1333752]

Gene Synonyms

Hd6, Hdac5, Sfc6, mHDA2

Location

Chromosome X: 2,579,840-2,597,606 reverse strand.

Reference strain equivalent

Hdac6

About this transcript

This transcript has 29 exons, is annotated with 27 domains and features and maps to 302 oligo probes.

Gene

This transcript is a product of gene MGP_LPJ_G0035421.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
MGP_LPJ_T0095276.1	-	4142	1149aa	MGP_LPJ_P0095276	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_LPJ_T0095275.1	-	4069	1149aa	MGP_LPJ_P0095275	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS40845	B1AUA8 B1AUA9 Q3UG37 Q9Z2V5	-
MGP_LPJ_T0095278.1	-	3371	1008aa	MGP_LPJ_P0095278	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_LPJ_T0095283.1	-	932	197aa	MGP_LPJ_P0095283	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_LPJ_T0095284.1	-	678	41aa	MGP_LPJ_P0095284	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-
MGP_LPJ_T0095277.1	-	5037	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0095279.1	-	894	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0095281.1	-	853	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0095280.1	-	804	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
MGP_LPJ_T0095282.1	-	718	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 29, Coding exons: 28, Transcript length: 4,069 bps, Translation length: 1,149 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Z2V5

CCDS

This transcript is a member of the Mouse LP/J CCDS set: CCDS40845

Version

MGP_LPJ_T0095275.1

Type

Protein coding

Annotation Method

Mouse strain gene models, generated by the Mouse Genomes Project, built from a combination of annotation mapping from the reference mouse (GRCm38) and strain-specific RNA-seq data.

Transcript: MGP_LPJ_T0095275.1

Summary

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Transcript: MGP_LPJ_T0095275.1

Summary

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