Transcript: ENSMUST00000074067.4 Trim38-201

Description

tripartite motif-containing 38 [Source:MGI Symbol;Acc:MGI:2684869]

Gene Synonyms

LOC214158

Location

Chromosome 13: 23,966,524-23,975,511 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 28 domains and features, is associated with 1077 variant alleles and maps to 82 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000064140.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000074067.4	Trim38-201	1480	471aa	ENSMUSP00000073709.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26370	Q5SZ99	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000226039.2	Trim38-203	1999	471aa	ENSMUSP00000153240.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26370	Q5SZ99	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000223911.2	Trim38-202	1457	249aa	ENSMUSP00000153540.2	Nonsense mediated decay		A0A286YDR5	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,480 bps, Translation length: 471 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5SZ99

CCDS

This transcript is a member of the Mouse CCDS set: CCDS26370

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000074067.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

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Transcript: ENSMUST00000074067.4 Trim38-201

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Transcript: ENSMUST00000074067.4 Trim38-201

Summary

About Us

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