Transcript: ENSMUST00000044207.5 Sart1-201

Description

squamous cell carcinoma antigen recognized by T cells 1 [Source:MGI Symbol;Acc:MGI:1309453]

Gene Synonyms

U5-110K

Location

Chromosome 19: 5,427,551-5,438,731 reverse strand.

About this transcript

This transcript has 20 exons, is annotated with 20 domains and features, is associated with 988 variant alleles and maps to 322 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000039148.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000044207.5	Sart1-201	5091	806aa	ENSMUSP00000047397.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29460	Q9Z315	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000398758.1	Sart1-218	2570	811aa	ENSMUSP00000177121.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000398756.1	Sart1-216	2534	812aa	ENSMUSP00000177119.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000235654.2	Sart1-202	428	113aa	ENSMUSP00000157615.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9E9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000398754.1	Sart1-214	3033	193aa	ENSMUSP00000177117.1	Nonsense mediated decay		-	-
ENSMUST00000398763.1	Sart1-223	2909	193aa	ENSMUSP00000177126.1	Nonsense mediated decay		-	-
ENSMUST00000398761.1	Sart1-221	2743	193aa	ENSMUSP00000177124.1	Nonsense mediated decay		-	-
ENSMUST00000398760.1	Sart1-220	2702	677aa	ENSMUSP00000177123.1	Nonsense mediated decay		-	-
ENSMUST00000398764.1	Sart1-224	2691	207aa	ENSMUSP00000177127.1	Nonsense mediated decay		-	-
ENSMUST00000398759.1	Sart1-219	2669	193aa	ENSMUSP00000177122.1	Nonsense mediated decay		-	-
ENSMUST00000398751.1	Sart1-211	2663	207aa	ENSMUSP00000177114.1	Nonsense mediated decay		-	-
ENSMUST00000398762.1	Sart1-222	2652	193aa	ENSMUSP00000177125.1	Nonsense mediated decay		-	-
ENSMUST00000398749.1	Sart1-209	2640	193aa	ENSMUSP00000177112.1	Nonsense mediated decay		-	-
ENSMUST00000398755.1	Sart1-215	2624	207aa	ENSMUSP00000177118.1	Nonsense mediated decay		-	-
ENSMUST00000398748.1	Sart1-208	2602	556aa	ENSMUSP00000177111.1	Nonsense mediated decay		-	-
ENSMUST00000398752.1	Sart1-212	2601	193aa	ENSMUSP00000177115.1	Nonsense mediated decay		-	-
ENSMUST00000398757.1	Sart1-217	2596	662aa	ENSMUSP00000177120.1	Nonsense mediated decay		-	-
ENSMUST00000398747.1	Sart1-207	2584	192aa	ENSMUSP00000177110.1	Nonsense mediated decay		-	-
ENSMUST00000398750.1	Sart1-210	2567	527aa	ENSMUSP00000177113.1	Nonsense mediated decay		-	-
ENSMUST00000398765.1	Sart1-225	2556	193aa	ENSMUSP00000177128.1	Nonsense mediated decay		-	-
ENSMUST00000398753.1	Sart1-213	2548	129aa	ENSMUSP00000177116.1	Nonsense mediated decay		-	-
ENSMUST00000398766.1	Sart1-226	2495	193aa	ENSMUSP00000177129.1	Nonsense mediated decay		-	-
ENSMUST00000235908.2	Sart1-204	671	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237915.2	Sart1-206	595	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000236511.2	Sart1-205	494	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235855.2	Sart1-203	360	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 5,091 bps, Translation length: 806 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Z315

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29460

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000044207.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000044207.5 Sart1-201

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Transcript: ENSMUST00000044207.5 Sart1-201

Summary

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