Transcript: ENSMUST00000055688.11 Phf13-201

Description

PHD finger protein 13 [Source:MGI Symbol;Acc:MGI:2446217]

Gene Synonyms

SPOC1

Location

Chromosome 4: 152,074,086-152,080,715 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 15 domains and features, is associated with 832 variant alleles and maps to 220 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000047777.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000055688.11	Phf13-201	3209	296aa	ENSMUSP00000062590.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS51388	Q3V230 Q8K2W6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000443865.1	Phf13-202	3206	295aa	ENSMUSP00000222228.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000443866.1	Phf13-203	2987	50aa	ENSMUSP00000222229.1	Nonsense mediated decay		-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,209 bps, Translation length: 296 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8K2W6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS51388

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000055688.11

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Upcoming Ensembl Platform Transition

Transcript: ENSMUST00000055688.11 Phf13-201

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Transcript: ENSMUST00000055688.11 Phf13-201

Summary

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