Transcript: ENSMUST00000045540.4 Socs7-201

Description

suppressor of cytokine signaling 7 [Source:MGI Symbol;Acc:MGI:2651588]

Gene Synonyms

2310063P06Rik, Nap4

Location

Chromosome 11: 97,253,377-97,289,368 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 31 domains and features, is associated with 1885 variant alleles and maps to 271 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000038485.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000045540.4	Socs7-201	7015	579aa	ENSMUSP00000040896.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS25319	Q8VHQ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000238729.2	Socs7-203	7131	648aa	ENSMUSP00000158611.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A571BEJ5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000149212.2	Socs7-202	506	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 7,015 bps, Translation length: 579 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8VHQ2

CCDS

This transcript is a member of the Mouse CCDS set: CCDS25319

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000045540.4

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENSMUST00000045540.4 Socs7-201

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Transcript: ENSMUST00000045540.4 Socs7-201

Summary

About Us

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