Transcript: ENSMUST00000078431.14

Description

novel transcript

Location

Chromosome 6: 122,113,572-122,128,150 forward strand.

About this transcript

This transcript has 6 exons, is associated with 1211 variant alleles and maps to 140 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000121497.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000351729.1	-	1529	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000189975.3	-	3297	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000245153.1	-	2482	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245292.1	-	2367	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000244871.1	-	2259	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000351731.1	-	2060	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000351734.1	-	2009	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000190643.8	-	1987	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000245224.2	-	1928	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245902.2	-	1895	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000351730.1	-	1777	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000351957.1	-	1690	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000351732.1	-	1667	No protein	-	lncRNA	-
ENSMUST00000078431.14	-	1598	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000244828.1	-	1593	No protein	-	lncRNA	-
ENSMUST00000351959.1	-	1524	No protein	-	lncRNA	-
ENSMUST00000351965.1	-	1306	No protein	-	lncRNA	-
ENSMUST00000351958.1	-	1298	No protein	-	lncRNA	-
ENSMUST00000241223.2	-	1295	No protein	-	lncRNA	-
ENSMUST00000351733.1	-	1290	No protein	-	lncRNA	-
ENSMUST00000245558.2	-	1277	No protein	-	lncRNA	-
ENSMUST00000246046.2	-	1212	No protein	-	lncRNA	-
ENSMUST00000299035.1	-	1202	No protein	-	lncRNA	-
ENSMUST00000351960.1	-	1190	No protein	-	lncRNA	-
ENSMUST00000351961.1	-	1172	No protein	-	lncRNA	-
ENSMUST00000351968.1	-	1038	No protein	-	lncRNA	-
ENSMUST00000351735.1	-	1035	No protein	-	lncRNA	-
ENSMUST00000351966.1	-	987	No protein	-	lncRNA	-
ENSMUST00000299036.1	-	862	No protein	-	lncRNA	-
ENSMUST00000299034.1	-	843	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000351962.1	-	736	No protein	-	lncRNA	-
ENSMUST00000351967.1	-	669	No protein	-	lncRNA	-
ENSMUST00000351969.1	-	654	No protein	-	lncRNA	-
ENSMUST00000351964.1	-	541	No protein	-	lncRNA	-
ENSMUST00000351963.1	-	457	No protein	-	lncRNA	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 1,598 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000078431.14

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

Transcript: ENSMUST00000078431.14

Summary

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Transcript: ENSMUST00000078431.14

Summary

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