Transcript: ENSMUST00000239530.1 Rps6ka4-204

Description

ribosomal protein S6 kinase, polypeptide 4 [Source:MGI Symbol;Acc:MGI:1930076]

Gene Synonyms

1110069D02Rik, 90kDa, MSK2

Location

Chromosome 19: 6,816,867-6,817,984 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature, is associated with 507 variant alleles and maps to 49 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000118668.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000239527.1	Rps6ka4-201	3140	773aa	ENSMUSP00000159422.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37899	Q9Z2B9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000239530.1	Rps6ka4-204	469	50aa	ENSMUSP00000159424.2	Nonsense mediated decay		A0A7N9VSZ1	-
ENSMUST00000239529.1	Rps6ka4-203	367	48aa	ENSMUSP00000159423.2	Nonsense mediated decay		A0A7N9VR96	-
ENSMUST00000239528.1	Rps6ka4-202	597	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000239532.1	Rps6ka4-206	361	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000239531.1	Rps6ka4-205	345	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 469 bps, Translation length: 50 residues

Version

ENSMUST00000239530.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000239530.1 Rps6ka4-204

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Transcript: ENSMUST00000239530.1 Rps6ka4-204

Summary

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