Transcript: ENSMUST00000231895.2 Gata6os-203

Description

GATA binding protein 6, opposite strand [Source:MGI Symbol;Acc:MGI:1915684]

Gene Synonyms

1010001N08Rik, Gata6as, LncGata6

Location

Chromosome 18: 11,044,924-11,052,530 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 746 variant alleles and maps to 55 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000097222.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000180789.5	Gata6os-201	4998	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000232314.2	Gata6os-204	854	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000240928.2	Gata6os-205	5325	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000241794.2	Gata6os-210	2319	No protein	-	lncRNA	-
ENSMUST00000327396.1	Gata6os-221	1824	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327408.1	Gata6os-233	1719	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327398.1	Gata6os-223	1658	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327410.1	Gata6os-235	1600	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242324.2	Gata6os-213	1583	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327395.1	Gata6os-220	1569	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327413.1	Gata6os-238	1563	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000243108.2	Gata6os-216	1457	No protein	-	lncRNA	-
ENSMUST00000181316.4	Gata6os-202	1448	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000242197.1	Gata6os-212	1390	No protein	-	lncRNA	-
ENSMUST00000241401.2	Gata6os-206	1356	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327407.1	Gata6os-232	1351	No protein	-	lncRNA	-
ENSMUST00000243177.2	Gata6os-217	1342	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327393.1	Gata6os-218	1318	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327412.1	Gata6os-237	1310	No protein	-	lncRNA	-
ENSMUST00000327409.1	Gata6os-234	1301	No protein	-	lncRNA	-
ENSMUST00000241495.2	Gata6os-207	1296	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327419.1	Gata6os-244	1230	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000241541.2	Gata6os-208	1168	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327416.1	Gata6os-241	1140	No protein	-	lncRNA	-
ENSMUST00000327415.1	Gata6os-240	1133	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327422.1	Gata6os-247	1116	No protein	-	lncRNA	-
ENSMUST00000327405.1	Gata6os-230	1087	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327414.1	Gata6os-239	1087	No protein	-	lncRNA	-
ENSMUST00000327425.1	Gata6os-250	1069	No protein	-	lncRNA	-
ENSMUST00000327402.1	Gata6os-227	948	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242673.2	Gata6os-215	946	No protein	-	lncRNA	-
ENSMUST00000327411.1	Gata6os-236	932	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242626.2	Gata6os-214	904	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327404.1	Gata6os-229	904	No protein	-	lncRNA	-
ENSMUST00000327401.1	Gata6os-226	872	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242081.2	Gata6os-211	865	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327403.1	Gata6os-228	859	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327424.1	Gata6os-249	804	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327418.1	Gata6os-243	789	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327406.1	Gata6os-231	784	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327428.1	Gata6os-253	783	No protein	-	lncRNA	-
ENSMUST00000327423.1	Gata6os-248	782	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000241595.2	Gata6os-209	775	No protein	-	lncRNA	-
ENSMUST00000327394.1	Gata6os-219	702	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327417.1	Gata6os-242	688	No protein	-	lncRNA	-
ENSMUST00000327427.1	Gata6os-252	684	No protein	-	lncRNA	-
ENSMUST00000327429.1	Gata6os-254	673	No protein	-	lncRNA	-
ENSMUST00000327430.1	Gata6os-255	635	No protein	-	lncRNA	-
ENSMUST00000231895.2	Gata6os-203	571	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327426.1	Gata6os-251	570	No protein	-	lncRNA	-
ENSMUST00000327397.1	Gata6os-222	567	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000327421.1	Gata6os-246	522	No protein	-	lncRNA	-
ENSMUST00000327431.1	Gata6os-256	520	No protein	-	lncRNA	-
ENSMUST00000327400.1	Gata6os-225	513	No protein	-	lncRNA	-
ENSMUST00000327420.1	Gata6os-245	509	No protein	-	lncRNA	-
ENSMUST00000327399.1	Gata6os-224	419	No protein	-	lncRNA	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 571 bps,

Version

ENSMUST00000231895.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000231895.2 Gata6os-203

Summary

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Transcript: ENSMUST00000231895.2 Gata6os-203

Summary

About Us

Get help

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