Transcript: ENSMUST00000233816.2 Pcp4-204

Description

Purkinje cell protein 4 [Source:MGI Symbol;Acc:MGI:97509]

Gene Synonyms

P16Rimb19, Pcp-4, Pep19

Location

Chromosome 16: 96,295,016-96,326,993 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 2053 variant alleles and maps to 137 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000090223.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000061739.9	Pcp4-201	641	62aa	ENSMUSP00000062539.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37414	P63054	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000233816.2	Pcp4-204	626	125aa	ENSMUSP00000156398.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WC97	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000232906.2	Pcp4-202	637	24aa	ENSMUSP00000156426.2	Nonsense mediated decay		A0A3B2W7C3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000233216.2	Pcp4-203	603	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 626 bps, Translation length: 125 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000233816.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENSMUST00000233816.2 Pcp4-204

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Transcript: ENSMUST00000233816.2 Pcp4-204

Summary

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