Transcript: ENSMUST00000122837.2 Gm11520-201

Description

predicted gene 11520 [Source:MGI Symbol;Acc:MGI:3650534]

Location

Chromosome 11: 95,201,255-95,215,322 forward strand.

About this transcript

This transcript has 3 exons, is associated with 1225 variant alleles and maps to 74 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000085143.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000270991.1	Gm11520-203	251	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000271013.1	Gm11520-225	1447	No protein	-	lncRNA	-
ENSMUST00000270992.1	Gm11520-204	1218	No protein	-	lncRNA	-
ENSMUST00000270995.1	Gm11520-207	999	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000270998.1	Gm11520-210	974	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000271004.1	Gm11520-216	928	No protein	-	lncRNA	-
ENSMUST00000271005.1	Gm11520-217	897	No protein	-	lncRNA	-
ENSMUST00000271002.1	Gm11520-214	880	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000270999.1	Gm11520-211	864	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000271006.1	Gm11520-218	849	No protein	-	lncRNA	-
ENSMUST00000271001.1	Gm11520-213	788	No protein	-	lncRNA	-
ENSMUST00000271010.1	Gm11520-222	773	No protein	-	lncRNA	-
ENSMUST00000271003.1	Gm11520-215	745	No protein	-	lncRNA	-
ENSMUST00000270996.1	Gm11520-208	705	No protein	-	lncRNA	-
ENSMUST00000271007.1	Gm11520-219	674	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000271000.1	Gm11520-212	672	No protein	-	lncRNA	-
ENSMUST00000270994.1	Gm11520-206	643	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000246703.2	Gm11520-202	635	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000122837.2	Gm11520-201	630	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000270993.1	Gm11520-205	590	No protein	-	lncRNA	-
ENSMUST00000271011.1	Gm11520-223	586	No protein	-	lncRNA	-
ENSMUST00000270997.1	Gm11520-209	542	No protein	-	lncRNA	-
ENSMUST00000271008.1	Gm11520-220	524	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000271009.1	Gm11520-221	507	No protein	-	lncRNA	-
ENSMUST00000271012.1	Gm11520-224	478	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000271014.1	Gm11520-226	347	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 630 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000122837.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000122837.2 Gm11520-201

Summary

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Transcript: ENSMUST00000122837.2 Gm11520-201

Summary

About Us

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