Transcript: ENSMUST00000238976.3 Sptbn2-204

Description

spectrin beta, non-erythrocytic 2 [Source:MGI Symbol;Acc:MGI:1313261]

Gene Synonyms

Spnb3

Location

Chromosome 19: 4,771,107-4,776,248 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 15 domains and features, is associated with 782 variant alleles and maps to 43 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000067889.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000008991.8	Sptbn2-201	8299	2388aa	ENSMUSP00000008991.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29434	Q68FG2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000238976.3	Sptbn2-204	953	225aa	ENSMUSP00000159038.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A5F8MPM8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000237694.2	Sptbn2-202	626	175aa	ENSMUSP00000158522.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BBH5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000238162.2	Sptbn2-203	360	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 953 bps, Translation length: 225 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSMUST00000238976.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000238976.3 Sptbn2-204

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Transcript: ENSMUST00000238976.3 Sptbn2-204

Summary

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