Transcript: ENSMUST00000232082.2 Hic2-202

Description

hypermethylated in cancer 2 [Source:MGI Symbol;Acc:MGI:1929869]

Gene Synonyms

HRG22

Location

Chromosome 16: 17,051,528-17,079,459 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 27 domains and features, is associated with 1531 variant alleles and maps to 125 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000050240.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000090190.14	Hic2-201	6354	619aa	ENSMUSP00000087656.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27999	Q9JLZ6-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000232082.2	Hic2-202	2765	566aa	ENSMUSP00000156293.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9JLZ6-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 2,765 bps, Translation length: 566 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9JLZ6

Version

ENSMUST00000232082.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000232082.2 Hic2-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000232082.2 Hic2-202

Summary

About Us

Get help

Our sister sites

Follow us