Transcript: ENSMUST00000230058.2 Efcab8-204

Description

EF-hand calcium binding domain 8 [Source:MGI Symbol;Acc:MGI:3644206]

Gene Synonyms

EG329541

Location

Chromosome 2: 153,622,812-153,634,698 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 1163 variant alleles and maps to 77 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000044083.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSMUST00000126656.4	Efcab8-201	4261	1323aa	ENSMUSP00000135661.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H3BL58	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000175856.3	Efcab8-203	1696	133aa	ENSMUSP00000134797.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H3BJ05	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000144827.2	Efcab8-202	1463	203aa	ENSMUSP00000135811.2	Nonsense mediated decay	Q8C9R9	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000230058.2	Efcab8-204	704	178aa	ENSMUSP00000155494.2	Nonsense mediated decay	A0A2R8VKG7	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 704 bps, Translation length: 178 residues

Version

ENSMUST00000230058.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000230058.2 Efcab8-204

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Transcript: ENSMUST00000230058.2 Efcab8-204

Summary

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