Transcript: ENSMUST00000231341.2 Psmb1-202

Description

proteasome (prosome, macropain) subunit, beta type 1 [Source:MGI Symbol;Acc:MGI:104884]

Gene Synonyms

Lmpc5

Location

Chromosome 17: 15,696,221-15,718,601 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 9 domains and features, is associated with 1612 variant alleles and maps to 264 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000014769.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000014913.11	Psmb1-201	1758	240aa	ENSMUSP00000014913.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28411	O09061 Q6RI64	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000231341.2	Psmb1-202	1970	203aa	ENSMUSP00000156355.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P7F1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000232500.2	Psmb1-204	1435	140aa	ENSMUSP00000156359.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A338P7C0	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000231696.2	Psmb1-203	1762	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,970 bps, Translation length: 203 residues

Version

ENSMUST00000231341.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

inferred transcript model [Definitions]

RNA-Seq supported only

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000231341.2 Psmb1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000231341.2 Psmb1-202

Summary

About Us

Get help

Our sister sites

Follow us