Transcript: ENSMUST00000236412.2 Mrpl49-203

Description

mitochondrial ribosomal protein L49 [Source:MGI Symbol;Acc:MGI:108180]

Gene Synonyms

4833419D18Rik, Nof1

Location

Chromosome 19: 6,104,961-6,107,109 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 5 domains and features, is associated with 691 variant alleles and maps to 71 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000007338.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000007482.8	Mrpl49-201	1764	166aa	ENSMUSP00000007482.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29488	Q9CQ40	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235520.2	Mrpl49-202	1311	56aa	ENSMUSP00000157535.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B993	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000236412.2	Mrpl49-203	421	115aa	ENSMUSP00000157635.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9G1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000236833.2	Mrpl49-204	146	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 421 bps, Translation length: 115 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSMUST00000236412.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000236412.2 Mrpl49-203

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Transcript: ENSMUST00000236412.2 Mrpl49-203

Summary

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