Transcript: ENSMUST00000099133.11 Arhgap40-201

Description

Rho GTPase activating protein 40 [Source:MGI Symbol;Acc:MGI:3649852]

Gene Synonyms

Gm14203

Location

Chromosome 2: 158,354,716-158,392,682 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 11 domains and features, is associated with 3177 variant alleles and maps to 138 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000074625.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000099133.11	Arhgap40-201	2162	672aa	ENSMUSP00000096736.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50787	A0A0A0MQB4 E9Q6X9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000135838.2	Arhgap40-202	924	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 2,162 bps, Translation length: 672 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: E9Q6X9

CCDS

This transcript is a member of the Mouse CCDS set: CCDS50787

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000099133.11

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000099133.11 Arhgap40-201

Summary

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Transcript: ENSMUST00000099133.11 Arhgap40-201

Summary

About Us

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