Transcript: ENSMUST00000030626.12 Tmem50a-201

Description

transmembrane protein 50A [Source:MGI Symbol;Acc:MGI:1919067]

Gene Synonyms

3200001F09Rik, CAM, Smp1

Location

Chromosome 4: 134,625,160-134,642,335 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 6 domains and features, is associated with 1748 variant alleles and maps to 134 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000028822.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000030626.12	Tmem50a-201	1204	157aa	ENSMUSP00000030626.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18779	Q52KP1 Q9CXL1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000105863.2	Tmem50a-202	719	157aa	ENSMUSP00000101489.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18779	Q52KP1 Q9CXL1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,204 bps, Translation length: 157 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9CXL1

CCDS

This transcript is a member of the Mouse CCDS set: CCDS18779

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000030626.12

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000030626.12 Tmem50a-201

Summary

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Transcript: ENSMUST00000030626.12 Tmem50a-201

Summary

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