Transcript: ENSMUST00000030528.9 Pla2g2d-201

Description

phospholipase A2, group IID [Source:MGI Symbol;Acc:MGI:1341796]

Gene Synonyms

Splash, mGIID

Location

Chromosome 4: 138,503,046-138,509,357 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 15 domains and features, is associated with 1036 variant alleles and maps to 273 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000041202.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000030528.9	Pla2g2d-201	2167	144aa	ENSMUSP00000030528.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS18833	Q3TYT9 Q9WVF6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000105806.2	Pla2g2d-202	1206	118aa	ENSMUSP00000101432.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS84811	Q9WVF6-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 2,167 bps, Translation length: 144 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9WVF6

CCDS

This transcript is a member of the Mouse CCDS set: CCDS18833

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000030528.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000030528.9 Pla2g2d-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000030528.9 Pla2g2d-201

Summary

About Us

Get help

Our sister sites

Follow us