Transcript: ENSMUST00000023828.9 Rttn-201

Description

rotatin [Source:MGI Symbol;Acc:MGI:2179288]

Gene Synonyms

4921538A15Rik, C530033I08Rik

Location

Chromosome 18: 88,989,914-89,149,140 forward strand.

About this transcript

This transcript has 49 exons, is annotated with 20 domains and features, is associated with 6674 variant alleles and maps to 490 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000023066.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023828.9	Rttn-201	7271	2226aa	ENSMUSP00000023828.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29390	Q8R4Y8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000236676.2	Rttn-208	2844	44aa	ENSMUSP00000158456.2	Nonsense mediated decay		A0A494BBH4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000237640.2	Rttn-210	654	123aa	ENSMUSP00000157632.2	Nonsense mediated decay		A0A494B9F2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000236313.2	Rttn-206	615	45aa	ENSMUSP00000157705.2	Nonsense mediated decay		A0A494B9L6	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000235882.2	Rttn-205	2123	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000235314.2	Rttn-203	363	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000235272.2	Rttn-202	3260	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000236531.2	Rttn-207	2209	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237196.2	Rttn-209	1798	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000235728.2	Rttn-204	488	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Summary

Statistics

Exons: 49, Coding exons: 49, Transcript length: 7,271 bps, Translation length: 2,226 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8R4Y8

CCDS

This transcript is a member of the Mouse CCDS set: CCDS29390

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000023828.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000023828.9 Rttn-201

Summary

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Transcript: ENSMUST00000023828.9 Rttn-201

Summary

About Us

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