Transcript: ENSMUST00000238278.4 Gm43050-205

Description

predicted gene 43050 [Source:MGI Symbol;Acc:MGI:5663187]

Location

Chromosome 5: 119,964,035-119,970,180 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 870 variant alleles and maps to 24 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000106795.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000313854.1	Gm43050-214	759	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000238278.4	Gm43050-205	2511	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000201062.5	Gm43050-201	2339	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000245421.2	Gm43050-211	1944	No protein	-	lncRNA	-
ENSMUST00000201152.5	Gm43050-202	1543	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000245267.2	Gm43050-210	1411	No protein	-	lncRNA	-
ENSMUST00000202665.3	Gm43050-204	1289	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000313891.1	Gm43050-250	1175	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000313885.1	Gm43050-244	1099	No protein	-	lncRNA	-
ENSMUST00000313883.1	Gm43050-242	1070	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000313882.1	Gm43050-241	1060	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000313887.1	Gm43050-246	1022	No protein	-	lncRNA	-
ENSMUST00000313858.1	Gm43050-218	996	No protein	-	lncRNA	-
ENSMUST00000245602.1	Gm43050-212	988	No protein	-	lncRNA	-
ENSMUST00000313888.1	Gm43050-247	959	No protein	-	lncRNA	-
ENSMUST00000245620.2	Gm43050-213	947	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000313884.1	Gm43050-243	920	No protein	-	lncRNA	-
ENSMUST00000313857.1	Gm43050-217	918	No protein	-	lncRNA	-
ENSMUST00000313889.1	Gm43050-248	909	No protein	-	lncRNA	-
ENSMUST00000244880.2	Gm43050-209	896	No protein	-	lncRNA	-
ENSMUST00000313879.1	Gm43050-238	884	No protein	-	lncRNA	-
ENSMUST00000314120.1	Gm43050-255	883	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242677.2	Gm43050-207	868	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000313886.1	Gm43050-245	851	No protein	-	lncRNA	-
ENSMUST00000313873.1	Gm43050-233	839	No protein	-	lncRNA	-
ENSMUST00000313892.1	Gm43050-251	826	No protein	-	lncRNA	-
ENSMUST00000242843.2	Gm43050-208	789	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000313875.1	Gm43050-235	732	No protein	-	lncRNA	-
ENSMUST00000313862.1	Gm43050-222	713	No protein	-	lncRNA	-
ENSMUST00000313863.1	Gm43050-223	712	No protein	-	lncRNA	-
ENSMUST00000241304.2	Gm43050-206	710	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000313855.1	Gm43050-215	704	No protein	-	lncRNA	-
ENSMUST00000314127.1	Gm43050-262	692	No protein	-	lncRNA	-
ENSMUST00000313859.1	Gm43050-219	684	No protein	-	lncRNA	-
ENSMUST00000313864.1	Gm43050-224	649	No protein	-	lncRNA	-
ENSMUST00000313871.1	Gm43050-231	635	No protein	-	lncRNA	-
ENSMUST00000314123.1	Gm43050-258	631	No protein	-	lncRNA	-
ENSMUST00000313860.1	Gm43050-220	610	No protein	-	lncRNA	-
ENSMUST00000314126.1	Gm43050-261	589	No protein	-	lncRNA	-
ENSMUST00000313861.1	Gm43050-221	587	No protein	-	lncRNA	-
ENSMUST00000313874.1	Gm43050-234	558	No protein	-	lncRNA	-
ENSMUST00000313866.1	Gm43050-226	557	No protein	-	lncRNA	-
ENSMUST00000314124.1	Gm43050-259	526	No protein	-	lncRNA	-
ENSMUST00000313865.1	Gm43050-225	504	No protein	-	lncRNA	-
ENSMUST00000202127.3	Gm43050-203	486	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000314125.1	Gm43050-260	466	No protein	-	lncRNA	-
ENSMUST00000313893.1	Gm43050-252	460	No protein	-	lncRNA	-
ENSMUST00000314122.1	Gm43050-257	459	No protein	-	lncRNA	-
ENSMUST00000313869.1	Gm43050-229	447	No protein	-	lncRNA	-
ENSMUST00000313895.1	Gm43050-254	444	No protein	-	lncRNA	-
ENSMUST00000313872.1	Gm43050-232	436	No protein	-	lncRNA	-
ENSMUST00000314121.1	Gm43050-256	436	No protein	-	lncRNA	-
ENSMUST00000313894.1	Gm43050-253	416	No protein	-	lncRNA	-
ENSMUST00000313867.1	Gm43050-227	414	No protein	-	lncRNA	-
ENSMUST00000313890.1	Gm43050-249	403	No protein	-	lncRNA	-
ENSMUST00000313868.1	Gm43050-228	399	No protein	-	lncRNA	-
ENSMUST00000313870.1	Gm43050-230	395	No protein	-	lncRNA	-
ENSMUST00000313878.1	Gm43050-237	390	No protein	-	lncRNA	-
ENSMUST00000314128.1	Gm43050-263	381	No protein	-	lncRNA	-
ENSMUST00000313856.1	Gm43050-216	377	No protein	-	lncRNA	-
ENSMUST00000313880.1	Gm43050-239	362	No protein	-	lncRNA	-
ENSMUST00000313877.1	Gm43050-236	303	No protein	-	lncRNA	-
ENSMUST00000314129.1	Gm43050-264	300	No protein	-	lncRNA	-
ENSMUST00000313881.1	Gm43050-240	296	No protein	-	lncRNA	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 2,511 bps,

Version

ENSMUST00000238278.4

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000238278.4 Gm43050-205

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSMUST00000238278.4 Gm43050-205

Summary

About Us

Get help

Our sister sites

Follow us