Transcript: ENSMUST00000190077.3 1700124L16Rik-203

Description

RIKEN cDNA 1700124L16 gene [Source:MGI Symbol;Acc:MGI:1915184]

Location

Chromosome 6: 83,738,738-83,740,326 reverse strand.

About this transcript

This transcript has 1 exon, is associated with 591 variant alleles and maps to 42 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000099354.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000189308.4	1700124L16Rik-202	1226	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000190077.3	1700124L16Rik-203	1589	No protein	-	lncRNA	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000286190.1	1700124L16Rik-204	1055	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000286191.1	1700124L16Rik-205	918	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000286208.1	1700124L16Rik-221	512	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000286211.1	1700124L16Rik-224	509	No protein	-	lncRNA	-
ENSMUST00000286209.1	1700124L16Rik-222	495	No protein	-	lncRNA	-
ENSMUST00000286205.1	1700124L16Rik-218	492	No protein	-	lncRNA	-
ENSMUST00000189129.7	1700124L16Rik-201	459	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000286198.1	1700124L16Rik-211	445	No protein	-	lncRNA	-
ENSMUST00000286203.1	1700124L16Rik-216	438	No protein	-	lncRNA	-
ENSMUST00000286192.1	1700124L16Rik-206	433	No protein	-	lncRNA	-
ENSMUST00000286200.1	1700124L16Rik-213	433	No protein	-	lncRNA	-
ENSMUST00000286194.1	1700124L16Rik-208	421	No protein	-	lncRNA	-
ENSMUST00000286202.1	1700124L16Rik-215	417	No protein	-	lncRNA	-
ENSMUST00000286197.1	1700124L16Rik-210	414	No protein	-	lncRNA	-
ENSMUST00000286193.1	1700124L16Rik-207	392	No protein	-	lncRNA	-
ENSMUST00000286207.1	1700124L16Rik-220	387	No protein	-	lncRNA	-
ENSMUST00000286210.1	1700124L16Rik-223	382	No protein	-	lncRNA	-
ENSMUST00000286206.1	1700124L16Rik-219	363	No protein	-	lncRNA	-
ENSMUST00000286199.1	1700124L16Rik-212	311	No protein	-	lncRNA	-
ENSMUST00000286201.1	1700124L16Rik-214	285	No protein	-	lncRNA	-
ENSMUST00000286196.1	1700124L16Rik-209	271	No protein	-	lncRNA	-
ENSMUST00000286204.1	1700124L16Rik-217	255	No protein	-	lncRNA	-

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 1,589 bps,

Transcript Support Level (TSL)

TSL:NA

Version

ENSMUST00000190077.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

not organism-supported [Definitions]

RNA-Seq supported partial

Transcript: ENSMUST00000190077.3 1700124L16Rik-203

Summary

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Transcript: ENSMUST00000190077.3 1700124L16Rik-203

Summary

About Us

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