Transcript: ENSMUST00000186088.2 Gm28905-201

Description

predicted gene 28905 [Source:MGI Symbol;Acc:MGI:5579611]

Location

Chromosome 10: 9,852,371-10,027,220 forward strand.

About this transcript

This transcript has 2 exons, is associated with 7582 variant alleles and maps to 5 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000101621.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000219328.2	Gm28905-204	1377	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000284003.1	Gm28905-205	1859	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000284007.1	Gm28905-209	1724	No protein	-	lncRNA	-
ENSMUST00000284006.1	Gm28905-208	1629	No protein	-	lncRNA	-
ENSMUST00000284004.1	Gm28905-206	1353	No protein	-	lncRNA	-
ENSMUST00000284005.1	Gm28905-207	931	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000284008.1	Gm28905-210	830	No protein	-	lncRNA	-
ENSMUST00000219242.2	Gm28905-203	820	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000284018.1	Gm28905-220	797	No protein	-	lncRNA	-
ENSMUST00000284015.1	Gm28905-217	774	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000284252.1	Gm28905-224	767	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000284016.1	Gm28905-218	644	No protein	-	lncRNA	-
ENSMUST00000284009.1	Gm28905-211	585	No protein	-	lncRNA	-
ENSMUST00000208997.3	Gm28905-202	580	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000284014.1	Gm28905-216	504	No protein	-	lncRNA	-
ENSMUST00000284017.1	Gm28905-219	466	No protein	-	lncRNA	-
ENSMUST00000284012.1	Gm28905-214	455	No protein	-	lncRNA	-
ENSMUST00000284010.1	Gm28905-212	400	No protein	-	lncRNA	-
ENSMUST00000284013.1	Gm28905-215	356	No protein	-	lncRNA	-
ENSMUST00000284020.1	Gm28905-222	355	No protein	-	lncRNA	-
ENSMUST00000284021.1	Gm28905-223	353	No protein	-	lncRNA	-
ENSMUST00000284011.1	Gm28905-213	311	No protein	-	lncRNA	-
ENSMUST00000284019.1	Gm28905-221	287	No protein	-	lncRNA	-
ENSMUST00000186088.2	Gm28905-201	275	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 275 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000186088.2

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000186088.2 Gm28905-201

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Transcript: ENSMUST00000186088.2 Gm28905-201

Summary

About Us

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