Transcript: ENSMUST00000185498.7 Ppp1r7-203

Description

protein phosphatase 1, regulatory subunit 7 [Source:MGI Symbol;Acc:MGI:1913635]

Gene Synonyms

2310014J01Rik, SDS22

Location

Chromosome 1: 93,271,377-93,280,371 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 16 domains and features, is associated with 857 variant alleles and maps to 46 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000026275.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000027494.11	Ppp1r7-201	10315	361aa	ENSMUSP00000027494.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15187	Q3UM45	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000185498.7	Ppp1r7-203	443	146aa	ENSMUSP00000140544.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A087WRA7	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000127141.2	Ppp1r7-202	634	109aa	ENSMUSP00000124279.2	Nonsense mediated decay		F6TGJ2	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 443 bps, Translation length: 146 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSMUST00000185498.7

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000185498.7 Ppp1r7-203

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Transcript: ENSMUST00000185498.7 Ppp1r7-203

Summary

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