Transcript: ENSMUST00000168475.3 BC050972-201

Description

cDNA sequence BC050972 [Source:MGI Symbol;Acc:MGI:3039596]

Location

Chromosome 9: 66,704,920-66,710,366 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 723 variant alleles and maps to 45 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000092131.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000347593.1	BC050972-204	553	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000169420.3	BC050972-203	2150	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000347602.1	BC050972-213	2126	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000169153.3	BC050972-202	1796	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000168475.3	BC050972-201	1791	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000347596.1	BC050972-207	1400	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000347607.1	BC050972-218	1150	No protein	-	lncRNA	-
ENSMUST00000347598.1	BC050972-209	627	No protein	-	lncRNA	-
ENSMUST00000347604.1	BC050972-215	580	No protein	-	lncRNA	-
ENSMUST00000347600.1	BC050972-211	551	No protein	-	lncRNA	-
ENSMUST00000347595.1	BC050972-206	541	No protein	-	lncRNA	-
ENSMUST00000347597.1	BC050972-208	539	No protein	-	lncRNA	-
ENSMUST00000347608.1	BC050972-219	510	No protein	-	lncRNA	-
ENSMUST00000347603.1	BC050972-214	475	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000347605.1	BC050972-216	470	No protein	-	lncRNA	-
ENSMUST00000347599.1	BC050972-210	460	No protein	-	lncRNA	-
ENSMUST00000347601.1	BC050972-212	443	No protein	-	lncRNA	-
ENSMUST00000347609.1	BC050972-220	438	No protein	-	lncRNA	-
ENSMUST00000347594.1	BC050972-205	406	No protein	-	lncRNA	-
ENSMUST00000347606.1	BC050972-217	375	No protein	-	lncRNA	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,791 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENSMUST00000168475.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000168475.3 BC050972-201

Summary

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Transcript: ENSMUST00000168475.3 BC050972-201

Summary

About Us

Get help

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