Transcript: ENSMUST00000160017.3 Gm16551-201

Description

predicted gene 16551 [Source:MGI Symbol;Acc:MGI:4414971]

Location

Chromosome 9: 74,755,673-74,760,171 forward strand.

About this transcript

This transcript has 3 exons, is associated with 618 variant alleles and maps to 133 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000066477.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000162089.3	Gm16551-205	4286	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000160842.4	Gm16551-202	2362	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000161862.9	Gm16551-204	1865	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000160979.10	Gm16551-203	3181	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000160017.3	Gm16551-201	2731	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000312584.1	Gm16551-229	1996	No protein	-	lncRNA	-
ENSMUST00000312587.1	Gm16551-232	1388	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000312582.1	Gm16551-227	1382	No protein	-	lncRNA	-
ENSMUST00000312581.1	Gm16551-226	1354	No protein	-	lncRNA	-
ENSMUST00000312585.1	Gm16551-230	1151	No protein	-	lncRNA	-
ENSMUST00000312563.1	Gm16551-208	1056	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000312561.1	Gm16551-206	1052	No protein	-	lncRNA	-
ENSMUST00000312586.1	Gm16551-231	1036	No protein	-	lncRNA	-
ENSMUST00000312564.1	Gm16551-209	1021	No protein	-	lncRNA	-
ENSMUST00000312565.1	Gm16551-210	1006	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000312568.1	Gm16551-213	963	No protein	-	lncRNA	-
ENSMUST00000312562.1	Gm16551-207	929	No protein	-	lncRNA	-
ENSMUST00000312566.1	Gm16551-211	929	No protein	-	lncRNA	-
ENSMUST00000312570.1	Gm16551-215	903	No protein	-	lncRNA	-
ENSMUST00000312588.1	Gm16551-233	892	No protein	-	lncRNA	-
ENSMUST00000312589.1	Gm16551-234	862	No protein	-	lncRNA	-
ENSMUST00000312567.1	Gm16551-212	859	No protein	-	lncRNA	-
ENSMUST00000312583.1	Gm16551-228	756	No protein	-	lncRNA	-
ENSMUST00000312569.1	Gm16551-214	676	No protein	-	lncRNA	-
ENSMUST00000312578.1	Gm16551-223	647	No protein	-	lncRNA	-
ENSMUST00000312571.1	Gm16551-216	630	No protein	-	lncRNA	-
ENSMUST00000312572.1	Gm16551-217	601	No protein	-	lncRNA	-
ENSMUST00000312579.1	Gm16551-224	592	No protein	-	lncRNA	-
ENSMUST00000312590.1	Gm16551-235	588	No protein	-	lncRNA	-
ENSMUST00000312573.1	Gm16551-218	570	No protein	-	lncRNA	-
ENSMUST00000312580.1	Gm16551-225	506	No protein	-	lncRNA	-
ENSMUST00000312575.1	Gm16551-220	488	No protein	-	lncRNA	-
ENSMUST00000312574.1	Gm16551-219	455	No protein	-	lncRNA	-
ENSMUST00000312576.1	Gm16551-221	341	No protein	-	lncRNA	-
ENSMUST00000312577.1	Gm16551-222	302	No protein	-	lncRNA	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,731 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENSMUST00000160017.3

Type

LncRNA

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana (TAGENE) manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSMUST00000160017.3 Gm16551-201

Summary

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Transcript: ENSMUST00000160017.3 Gm16551-201

Summary

About Us

Get help

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